Welcome to OLego’s documentation!

Contents:

• What is OLego?
• Versions
  • v1.0.6 ( 08-09-2012 )
  • v1.0.5 ( 07-16-2012 )
  • v1.0.4 ( 06-12-2012 )
  • v1.0.3 ( 06-10-2012 )
  • v1.0.0 ( 05-15-2012 )
• Prerequisites
• Download
• Installation
• Usage
  • Build the index for the genome sequence
  • Running OLego
    • Arguments:
    • Basic options:
    • Advanced options:
  • Other useful scripts
    • mergePEsam.pl
    • xa2multi.pl
    • sam2bed.pl
    • bed2junc.pl
    • regression_model_gen
• Additional notes
  • File formats
    • SAM format
    • junc format
• Examples

Indices and tables

• Search Page